Design and evaluation of PCR primers for analysis of bacterial populations in wine by denaturing gradient gel electrophoresis

Autor: López Alfaro, IsabelRuiz Larrea, María Fernanda; Cocolin, F.; Vandergheynst, J.; Mills, D.A.; Phister, T.; Marshall, M.; Orr, E.; 

Tipo de documento: Artículo de revista

Revista: Applied and environmental microbiology. ISSN: 0099-2240. Año: 2003. Número: 11. Volumen: 69. Páginas: 6801-6807.

JCR:
Edición:
Science  Área: Biotechnology and Applied Microbiology  Quartil: Q1  Lugar área: 15/132  F. impacto: 3,820 
Edición:
Science  Área: Microbiology  Quartil: Q1  Lugar área: 13/84  F. impacto: 3,820 

SCIMAGO:
SJR:
1,815  SNIP: 1,799 

CIRC: GRUPO A - EXCELENCIA

Referencias:

  • Amann, R.I., Ludwig, W., Schleifer, K.H., Phylogenetic identification and in situ detection of individual microbial cells without cultivation (1995) Microbiol. Rev., 59, pp. 143-169
  • Ampe, F., Omar, N.B., Moizan, C., Wacher, C., Guyot, J.-P., Polyphasic study of the spatial distribution of microorganisms in Mexican pozol, a fermented maize dough, demonstrates the need for cultivation-independent methods to investigate traditional fermentations (1999) Appl. Environ. Microbiol., 65, pp. 5464-5473
  • Barbe, J.C., De Revel, G., Joyeux, A., Bertrand, A., Lonvaud-Funel, A., Role of botrytized grape microorganisms in SO2binding phenomena (2001) J. Appl. Microbiol., 90, pp. 34-42
  • Ben Omar, N., Ampe, F., Microbial community dynamics during production of the Mexican fermented maize dough pozol (2000) Appl. Environ. Microbiol., 66, pp. 3664-3673
  • Bisson, L.F., Stuck and sluggish fermentations (1999) Am. J. Enol. Vitic., 50, pp. 107-119
  • Bisson, L.F., Kunkee, R.E., Microbial interactions during wine production (1993) Mixed Cultures in Biotechnology, pp. 37-68. , J. G. Zeikus and E. A. Johnson (ed.). McGraw-Hill, New York, N.Y
  • Boulton, R.B., Singleton, V.L., Bisson, L.F., Kunkee, R.E., (1996) Principles and Practices of Winemaking, , Chapman &
  • Hall, New York. N.Y
  • Cocolin, L., Bisson, L.F., Mills, D.A., Direct profiling of the yeast dynamics in wine fermentations (2000) FEMS Microbiol. Lett., 189, pp. 81-87
  • Cocolin, L., Heisey, A., Mills, D.A., Direct identification of the indigenous yeasts in commercial wine fermentations (2001) Am. J. Enol. Vitic., 52, pp. 49-53
  • Cole, J.R., Chai, B., Marsh, T.L., Farris, R.J., Wang, Q., Kulam, S.A., Chandra, S., Tiedje, J.M., The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy (2003) Nucleic Acids Res., 31, pp. 442-443
  • El Fantroussi, S., Verschuere, L., Verstraete, W., Top, E.M., Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles (1999) Appl. Environ. Microbiol., 65, pp. 982-988
  • Ferris, M.J., Muyzer, G., Ward, D.M., Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community (1996) Appl. Environ. Microbiol., 62, pp. 340-346
  • Fleet, G.H., The microbiology of alcoholic beverages (1997) Microbiology of Fermented Foods, 2nd Ed., 1, pp. 217-262. , B. J. B. Wood (ed.). Blackie Academic &
  • Professional, London, United Kingdom
  • Giraffa, G., Neviani, E., DNA-based, culture-independent strategies for evaluating microbial communities in food-associated ecosystems (2001) Int. J. Food Microbiol., 67, pp. 19-34
  • Henick-Kling, T., Malolactic fermentation (1993) Wine Microbiology and Bio/Technology, pp. 289-326. , G. Fleet (ed.). Harwood Academic Publishers, Philadelphia, Pa
  • Hugenholtz, P., Goebel, B.M., Pace, N.R., Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity (1998) J. Bacteriol., 180, pp. 4765-4774
  • Lonvaud-Funel, A., Lactic acid bacteria in the quality improvement and depreciation of wine (1999) Antonie Leeuwenhoek, 76, pp. 317-331
  • Ludovico, P., Sousa, M.J., Silva, M.T., Leao, C., Corte-Real, M., Saccharomyces cerevisiae commits to a programmed cell death process in response to acetic acid (2001) Microbiology, 147, pp. 2409-2415
  • Marchesi, J.R., Sato, T., Weightman, A.J., Martin, T.A., Fry, J.C., Hiom, S.J., Dymock, D., Wade, W.G., Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA (1998) Appl. Environ. Microbiol., 64, pp. 795-799
  • Millet, V., Lonvaud-Funel, A., The viable but non-culturable state of wine microorganisms during storage (2000) Lett. Appl. Microbiol., 30, pp. 136-141
  • Mills, D.A., Johannsen, E.A., Cocolin, L., Yeast diversity and persistence in botrytis-affected wine fermentations (2002) Appl. Environ. Microbiol., 68, pp. 4884-4893
  • Muyzer, G., Smalla, K., Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology (1998) Antonie Leeuwenhoek, 73, pp. 127-141
  • Muyzer, G., Teske, A., Wirsen, C.O., Jannasch, H.W., Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments (1995) Arch. Microbiol., 164, pp. 165-172
  • Ribéreau-Gayon, P., (2000) Handbook of Enology, , Wiley, Chichester, United Kingdom
  • Tannock, G.W., Tilsala-Timisjarvi, A., Rodtong, S., Ng, J., Munro, K., Alatossava, T., Identification of Lactobacillus isolates from the gastrointestinal tract, silage, and yogurt by 16S-23S rRNA gene intergenic spacer region sequence comparisons (1999) Appl. Environ. Microbiol., 65, pp. 4264-4267
  • Terzaghi, B.E., Sandine, W.E., Improved medium for lactic streptococci and their bacteriophages (1975) Appl. Microbiol., 29, pp. 807-813
  • Van de Peer, Y., De Rijk, P., Wuyts, J., Winkelmans, T., De Wachter, R., The European small subunit ribosomal RNA database (2000) Nucleic Acids Res., 28, pp. 175-176
  • Walter, J., Hertel, C., Tannock, G.W., Lis, C.M., Munro, K., Hammes, W.P., Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella species in human feces group-specific PCR primers and by using denaturing gradient gel electrophoresis (2000) Appl. Environ. Microbiol., 67, pp. 2578-2585
  • Zoetendal, E.G., Akkermans, A.D.L., De Vos, W.M., Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria (1998) Appl. Environ. Microbiol., 64, pp. 3854-3859