Antibiogramj: A tool for analysing images from disk diffusion tests

Autor: Alonso Arribas, Carla AndreaDomínguez Pérez, CésarHeras Vicente, JonathanMata Sotés, Eloy JavierPascual Martínez-Losa, María VicoTorres Manrique, CarmenZarazaga Chamorro, Myriam

Tipo de documento: Artículo de revista

Revista: Computer Methods and Programs in Biomedicine. ISSN: 0169-2607. Año: 2017. Volumen: 143. Páginas: 159-169.

CIRC: GRUPO A

Referencias:

  • Jenkins, S.G., Schuetz, A.N., Current concepts in laboratory testing to guide antimicrobial therapy (2012) Mayo Clin. Proc., 87 (3), pp. 290-675
  • Matuschek, E., Brown, D.F., Kahlmeter, G., Development of the EUCAST disk diffusion antimicrobial susceptibility testing method and its implementation in routine microbiology laboratories (2014) Clin. Microbiol. Infect., 20 (4), pp. O255-66
  • Bauer, A.W., Kirby, W.M., Sherris, J.C., Turck, M., Antibiotic susceptibility testing by a standardized single disk method (1966) Am. J. Clin. Pathol., 45, pp. 493-496
  • Reller, L.B., Weinstein, M., Jorgensen, J.H., Ferraro, M.J., Antimicrobial susceptibility testing: a review of general principles and contemporary practices (2009) Clin. Infect. Dis., 49 (11), pp. 1749-1755
  • Clinical, Institute, L.S., Performance standards for antimicrobial susceptibility testing (2016) CLSI, , 26 Clinical and Laboratory Standards Institute Wayne, PA Supplement M100S
  • E.C.o. A. S. Testing, (2016) Breakpoint tables for interpretation of MICs and zone diameters, , Version 6.0
  • Cantón, R., Interpretive reading of the antibiogram: intellectual exercise or clinical need? (2002) Enfermedades Infecciosas y Microbiología Clínica, 20 (4), pp. 176-185
  • Livermore, D.M., Winstanley, T.G., Shannon, K.P., Interpretative reading: recognizing the unusual and inferring resistance mechanisms from resistance phenotypes (2001) J. Antimicrob. Chemother., 48, pp. 87-102
  • Hombach, M., Zbinden, R., Böttger, E.C., Standardisation of disk diffusion results for antibiotic susceptibility testing using the sirscan automated zone reader (2013) BMC Microbiol., 13 (255)
  • Felmingham, D., Brown, D.F.J., Instrumentaion in antimicrobial susceptibility testing (2001) J. Antimicrob. Chemother., 48 (S1), pp. 81-85
  • Rhoads, D.D., Novak, S.M., Pantanowitz, L., A review of the current state of digital plate reading of cultures in clinical microbiology (2015) J. Pathol. Inform., 6 (23)
  • Schneider, C.A., Rasband, W.S., Eliceiri, K.W., NIH image to imageJ (2012) Nat. Methods, 9, pp. 671-675
  • Kaehler, A., Bradski, G., Learning openCV 3 (2015), O'Reilly MediaOracle, JavaDB Reference Manual (2014) Technical Report
  • Evjen, B., Professional XML (2007), Wiley Publishing IncYuen, H.K., Comparative study of hough transform methods for circle finding (1990) Image Vis. Comput., 8 (1), pp. 71-77
  • Rublee, E., ORB: an efficient alternative to SIFT or SURF (2011) Proceedings of International Conference on Computer Vision, pp. 2564-2571. , IEEE
  • E.C.o. A. S. Testing, (2013) EUCAST guidelines for detection of resistance mechanisms and specific resistances of clinical and/or epidemiological importance, , http://www.eucast.org/resistance_mechanisms/
  • Hejblum, G., Automated interpretation of disk diffusion antibiotic susceptibility tests with the radial profile analysis algorithm (1993) J. Clin. Microbiol., 31, pp. 2396-2401
  • Costa, L.F.R., Development of an automatic identification algorithm for antibiogram analysis (2015) Comput. Biol. Med., 67, pp. 104-115
  • Croxatto, A., Laboratory automation in clinical bacteriology: what system to choose? (2016) Clin. Microbiol. Infect., 22 (3), pp. 217-235
  • Lestari, E.S., Comparison of the accuracy of disk diffusion zone diameters obtained by manual zone measurements to that by automated zone measurements to determine antimicrobial susceptibility (2008) J. Microbiol. Methods, 75 (2), pp. 177-181
  • Mochon, A.B., Cruz, M.S., Telemicrobiology: focusing on quality in an era of laboratory consolidation (2016) Clin. Microbiol. Newsl., 38 (3), pp. 19-24
  • Geiss, H.K., Klar, U.E., Evaluation of the BIOMIC video reader system for routine use in the clinical microbiology laboratory (2000) Diagn. Microbiol. Infect. Dis., 37 (3), pp. 151-155
  • (2012) Quantification of bacterial colonies on an agar plate, , Last accessed on 24th November 2016
  • Gerstein, A.C., Diskimager: quantification of resistance and tolerance to antimicrobial drugs using disk diffusion assays (2016) Microbiology, , DOI: 10.1099/mic.0.000295
  • Kolbert, M., Chegrani, F., Shah, P.M., Evaluation of the OSIRIS video reader as an automated measurement system for the agar disk diffusion technique (2004) Clin. Microbiol. Infect., 10 (5), pp. 416-420
  • Idelevich, E.A., Evaluation of an automated system for reading and interpreting disk diffusion antimicrobial susceptibility testing of fastidious bacteria (2016) PLoS ONE, 11 (7), p. e0159183. , DOI: 10.1371/journal.pone.0159183
  • Korgenski, E.K., Daly, J.A., Evaluation of the BIOMIC video reader system for determining interpretive categories of isolates on the basis of disk diffusion susceptibility results (1998) J. Clin. Microbiol., 36 (1), pp. 302-304