Quantitative genetic analysis of berry firmness in table grape (Vitis vinifera L.)

Autor: Carreno, I.; Cabezas, J.A.; Martinez-Mora, C.; Arroyo-Garcia, R.; Cenis, J.L.; Martínez Zapater, José Miguel; Carreno, J.; Ruiz-Garcia, L.; 

Tipo de documento: Artículo de revista

Revista: Tree Genetics and Genomes. ISSN: 1614-2942. Año: 2014. Número: 1. Volumen: 11.

Texto completo open access 

JCR:
Edición:
Science  Área: FORESTRY  Quartil: Q1  Lugar área: 06/65  F. impacto: 2,451 
Edición:
Science  Área: GENETICS & HEREDITY  Quartil: Q3  Lugar área: 06/65  F. impacto: 2,451 
Edición:
Science  Área: HORTICULTURE  Quartil: Q1  Lugar área: 06/65  F. impacto: 2,451 

SCIMAGO:
SJR:
,941  SNIP: 1,216 

CIRC: GRUPO A - EXCELENCIA

Referencias:

  • Adam-Blondon, A.F., Roux, C., Claux, D., Butterlin, G., Merdinoglu, D., This, P., Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics (2004) Theor Appl Genet, 109, pp. 1017-1027. , COI: 1:CAS:528:DC%2BD2cXotlKqt7Y%3D, PID: 15184982
  • Akkurt, M., Welter, L., Maul, E., Töpfer, R., Zyprian, E., Development of SCAR markers linked to powdery mildew (Uncinula necator) resistance in grapevine (Vitis vinifera L and Vitis sp) (2007) Mol Breed, 19, pp. 103-111. , COI: 1:CAS:528:DC%2BD2sXht12ltQ%3D%3D
  • Barba, P., Cadle-Davidson, L., Harriman, J., Glaubitz, J., Brooks, S., Hyma, K., Reisch, B., Grapevine powdery mildew resistance and susceptibility loci identified on a high-resolution SNP map (2014) Theor Appl Genet, 127, pp. 73-84. , COI: 1:CAS:528:DC%2BC3sXhsFCqtrzP, PID: 24072208
  • Barnavon, L., Doco, T., Terrier, N., Ageorgees, A., Romieu, C., Pellerin, P., Involvement of pectin methyl-esterase during the ripening of grape berries: partial cDNA isolation, transcript expression and changes in the degree of methyl-esterification of cell wall pectins (2001) Phytochemistry, 58, pp. 693-701. , COI: 1:CAS:528:DC%2BD3MXnslWnsro%3D, PID: 11672733
  • Battilana, J., Costantini, L., Emmanueli, F., Sevini, F., Segala, F., Moser, S., Velasco, R., Grando, M.S., The 1-deoxy-D-xylulose 5-phosphate synthase gene co-localizes with a major QTL affecting monoterpene content in grapevine (2009) Theor Appl Genet, 108, pp. 653-669
  • Brummel, D.A., Harpster, M.H., Cell wall metabolism in fruit softening and quality and its manipulation in transgenic plants (2001) Plant Mol Biol, 47, pp. 311-340
  • Cabezas, J.A., Cervera, M.T., Ruiz-García, L., Carreño, J., Martínez-Zapater, J.M., A genetic analysis of seed and berry weight in grapevine (2006) Genome, 49, pp. 1572-1585. , COI: 1:CAS:528:DC%2BD2sXkvFeitrc%3D, PID: 17426772
  • Cabezas, J.A., Ibáñez, J., Lijavetzky, D., Vélez, D., Bravo, G., Rodríguez, V., Carreño, I., Martínez-Zapater, J.M., A 48 SNP set for grapevine cultivar identification (2011) BMC Plant Biol, 11, p. 153. , COI: 1:CAS:528:DC%2BC38XnsFahsQ%3D%3D, PID: 22060012
  • Cain, D.W., Emershad, R.L., Tarailo, R.E., In ovulo embryo culture and seedling development of seeded and seedless grapes (Vitis vinifera L.) (1983) Vitis, 22, pp. 9-14
  • Carreño, J., Martínez, A., García, E., Ortiz, M., Pinilla, M.F., García, M.G., Cultivo de embriones de vid (Vitis vinifera L.) para la obtención de nuevas variedades de uva de mesa sin semillas (1997) Vitic Enol Prof, 52, pp. 37-45
  • Carpita, N.C., Gibeaut, D.M., Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth (1993) Plant J, 3, pp. 1-30. , COI: 1:CAS:528:DyaK3sXitV2gtLk%3D, PID: 8401598
  • Cefola, M., Pace, B., Buttaro, D., Santamaria, P., Serio, F., Postharvest evaluation of soilless-grown table grape during storage in modified atmosphere (2011) J Sci Food Agric, 91, pp. 2153-2159. , COI: 1:CAS:528:DC%2BC3MXhtVegtbrI, PID: 21538370
  • Chakravarti, A., Lasher, L.K., Reefer, J.E., A maximum likelihood method for estimating genome length using genetic linkage data (1991) Genetics, 128, pp. 175-182. , COI: 1:STN:280:DyaK3M3osFeqtg%3D%3D, PID: 2060775
  • Chapman, N.H., Bonnet, J., Grivet, L., Lynn, J., Graham, N., Smith, R., Sun, G., Seymour, G.B., High-resolution mapping of a fruit firmness-related quantitative trait locus in tomato reveals epistatic interactions associated with a complex combinatorial locus (2012) Plant Physiol, 159, pp. 1644-1657. , COI: 1:CAS:528:DC%2BC38Xht1CgsL7J, PID: 22685170
  • Cliff, M.A., Dever, M.C., Reynolds, A.G., Descriptive profiling of new and commercial British Columbia table grape cultivars (1996) Am J Enol Vitic, 47, pp. 301-308
  • Correa, J., Mamani, M., Muñoz-Espinoza, C., Laborie, D., Muñoz, C., Pinto, M., Hinrichsen, P., Heritability and identification of QTLs and underlying candidate genes associated with the architecture of the grapevine cluster (Vitis vinifera L.) (2014) Theor Appl Genet, 127, pp. 1143-1162. , COI: 1:CAS:528:DC%2BC2cXjt1ehsrs%3D, PID: 24556794
  • Cosgrove, D.J., Growth of the plant cell wall (2005) Nat Rev, 6, pp. 850-861. , COI: 1:CAS:528:DC%2BD2MXhtFKlsL3M
  • Costantini, L., Battilana, J., Lamaj, F., Fanizza, G., Grando, M.S., Berry and phenology-related traits in grapevine (Vitis vinifera L.): from quantitative trait loci to underlying genes (2008) BMC Plant Biol, 8, p. 38. , PID: 18419811
  • Costantini, L., Moreira, F.M., Zyprian, E., Martínez-Zapater, J.M., Grando, M.S., Roubelakis-Angelakis, K.A., Molecular maps, QTL mapping and association mapping in grapevine (2009) Grapevine molecular physiology &
  • biotechnology, pp. 535-563. , Springer, New York:
  • Coupel-Ledru, A., Lebon, E., Christophe, A., Doligez, A., Cabrera-Bosquet, L.L., Péchier, P., Hamard, P., Simonneau, T., Genetic variation in a grapevine progeny (Vitis vinifera L. cvs Grenache×Syrah) reveals inconsistencies between maintenance of daytime leaf water potential and response of transpiration rate under drought (2014) J Exp Bot, , PID: 25381432
  • Deluc, L.G., Grimplet, J., Wheatley, M.D., Tillett, R.L., Quilici, D.R., Osborne, C., Schooley, D.A., Cramer, G.R., Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development (2007) BMC Genomics, 8, pp. 429-471. , PID: 18034876
  • Doligez, A., Bouquet, A., Danglot, Y., Lahogue, F., Riaz, S., Meredith, C.P., Edwards, K.J., This, P., Genetic mapping of grapevine (Vitis vinifera L.) applied to the detection of QTLs for seedlessness and berry weight (2002) Theor Appl Genet, 105, pp. 780-795. , COI: 1:CAS:528:DC%2BD38XnvVSgs7g%3D, PID: 12582493
  • Doligez, A., Adam-Blondon, A.F., Cipriani, G., Di Gaspero, G., Laucou, V., Merdinoglu, D., Meredith, C.P., This, P., An integrated SSR map of grapevine based on five mapping populations (2006) Theor Appl Genet, 113, pp. 369-382. , COI: 1:CAS:528:DC%2BD28Xms1Oit7k%3D, PID: 16799809
  • Doligez, A., Bertrand, Y., Dias, S., Grolier, M., Ballester, J.F., Bouquet, A., This, P., QTLs for fertility in table grape (2010) Tree Genet Genomes, 6, pp. 413-422
  • Doligez, A., Bertrand, Y., Farnos, M., Grolier, M., Romieu, C., Esnault, F., Dias, S., This, P., New stable QTLs for berry weight do not colocalize with QTLs for seed traits in cultivated grapevine (Vitis vinifera L) (2013) BMC Plant Biol, 13, p. 217. , PID: 24350702
  • Don, R.H., Cox, P.T., Wainwright, B.J., Baker, K., Mattick, J.S., ‘Touchdown’ PCR to circumvent spurious priming during gene amplification (1991) Nucl Ac Res, 19, p. 4008. , COI: 1:CAS:528:DyaK3MXmtVShu70%3D
  • Duchêne, E., Butterlin, G., Dumas, V., Merdinoglu, D., Towards the adaptation of grapevine varieties to climate change: QTLs and candidate genes for developmental stages (2012) Theor Appl Genet, 124, pp. 623-635. , PID: 22052019
  • Fortes, A.M., Agudelo-Romero, P., Silva, M.S., Ali, K., Sousa, L., Maltese, F., Choi, Y.H., Pais, M.S., Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening (2011) BMC Plant Biol, 11, p. 149
  • Fouquet, R., Léon, C., Ollat, N., Barrieu, F., Identification of grapevine aquaporins and expression analysis in developing berries (2008) Plant Cell Rep, 27, pp. 1541-1550. , COI: 1:CAS:528:DC%2BD1cXpsVClu7o%3D, PID: 18560835
  • Gerber, S., Rodolphe, F., An estimation of the genome length of maritime pine (Pinus pinaster Ait) (1994) Theor Appl Genet, 88, pp. 289-292. , COI: 1:STN:280:DC%2BC2c7isVymsw%3D%3D, PID: 24186008
  • Glissant, D., Dédaldéchamp, F., Delrot, S., Transcriptomic analysis of grape berry softening during ripening (2008) J Int Sci Vigne Vin, 42, pp. 1-13. , COI: 1:CAS:528:DC%2BD1cXot1ensr0%3D
  • Grattapaglia, D., Sederoff, R., Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: Mapping strategy and RAPD markers (1994) Genetics, 137, pp. 1121-1137. , COI: 1:CAS:528:DyaK2MXmslWltw%3D%3D, PID: 7982566
  • Grotte, M., Cadot, Y., Poussier, A., Loonis, D., Pietri, E., Duprat, F., Barbeau, G., Determination of the maturity status of grape berry (Vitis vinifera) from physical measurement: methodology (2001) J Int Sci Vigne Vin, 35, pp. 87-98
  • Grzeskowiak, L., Costantini, L., Lorenzi, S., Grando, M.S., Signatures of selection in the grapevine flowering gene network. In: 57th Annual congress Società Italiana di Genetica Agraria, Foggia (2013) ISBN: 978-88-904570-3-6, , http://hdl.handle.net/10449/22734
  • Guillaumie, S., Fouquet, R., Kappel, C., Camps, C., Terrier, N., Transcriptional analysis of late ripening stages of grapevine berry (2011) BMC Plant Biol, 11, p. 165. , COI: 1:CAS:528:DC%2BC38XnsFagsg%3D%3D, PID: 22098939
  • Hormaza, J.I., Molecular characterization and similarity relationships among apricot (Prunus armeniaca L) genotypes using simple sequence repeats (2002) Theor Appl Genet, 104, pp. 321-328. , COI: 1:CAS:528:DC%2BD38XislOgtrw%3D, PID: 12582704
  • Huang, Y.F., Doligez, A., Fournier-Level, A., Le Cunff, L., Bertrand, Y., Canaguier, A., Morel, C., This, P., Dissecting genetic architecture of grape proanthocyanidin composition through quantitative trait locus mapping (2012) BMC Plant Biol, 12, pp. 30-59. , COI: 1:CAS:528:DC%2BC38Xmt1ejsro%3D, PID: 22369244
  • Hulbert, S.H., Ilott, T.W., Legg, E.J., Lincoln, S.E., Lander, E.S., Michelmore, R.W., Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphisms (1988) Genetics, 120, pp. 947-958. , COI: 1:STN:280:DyaL1M7jsl2gtA%3D%3D, PID: 2906309
  • Ishimaru, M., Kobayashi, S., Expression of a xylogucan endo-transglycosylase gene is closely related to grape berry softening (2002) Plant Sci, 162, pp. 621-628. , COI: 1:CAS:528:DC%2BD38Xis1Cmu74%3D
  • Ishimaru, M., Smith, D.L., Gross, K., Kobayashi, S., Expression of three expansin genes during development and maturation of Kyoho grape berries (2007) J Plant Phys, 164, pp. 1675-1682. , COI: 1:CAS:528:DC%2BD2sXhsVOnsr3K
  • Jaillon, O., The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla (2007) Nature, 449, pp. 463-467. , COI: 1:CAS:528:DC%2BD2sXhtV2is7%2FF, PID: 17721507
  • Jansen, R.C., Stam, P., High resolution of quantitative traits into multiple loci via interval mapping (1994) Genetics, 136, pp. 1447-1455. , COI: 1:STN:280:DyaK2c3otl2jug%3D%3D, PID: 8013917
  • Karaagac, E., Vargas, A., De Andrés, M.T., Carreño, I., Ibáñez, J., Carreño, J., Martínez-Zapater, J.M., Cabezas, J.A., Marker assisted selection for seedlessness in table grape breeding (2012) Tree Genet Genomes, 8, pp. 1003-1015
  • Kosambi, D.D., The estimation of distances from recombination values (1944) Ann Eugen, 12, pp. 172-175
  • Lander, E.S., Botstein, D., Mapping mendelian factors underlying quantitative traits using RFLP linkage maps (1989) Genetics, 121, pp. 185-199. , COI: 1:STN:280:DyaL1M7jsl2nug%3D%3D, PID: 2563713
  • Lange, K., Boehnke, M., How many polymorphic genes will it take to span the human genome? (1982) Am J Human Genet, 34, pp. 842-845. , COI: 1:STN:280:DyaL3s%2FpslGisg%3D%3D
  • Lehmann, E.L., (1975) Nonparametrics: statistical methods based on ranks, , Holden-Day, San Francisco:
  • Le Moigne, M., Maury, C., Bertrand, D., Jourjon, F., Sensory and instrumental characterization of Cabernet Franc grapes according to ripening stages and growing location (2008) Food Qual Pref, 19, pp. 220-231
  • Letaief, H., Rolle, L., Gerbi, V., Mechanical behavior of winegrapes under compression tests (2008) Am J Enol Vitic, 59, pp. 323-329
  • Lijavetzky, D., Cabezas, J.A., Ibáñez, A., Rodríguez, V., Martínez-Zapater, J.M., High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L) by combining a re-sequencing approach and SNPlex technology (2007) BMC Genomics, 8, p. 424. , PID: 18021442
  • Lijavetzky, D., Carbonell-Bejerano, P., Grimplet, J., Bravo, G., Flores, P., Fenoll, J., Hellín, P., Martínez-Zapater, J.M., Berry flesh and skin ripening features in Vitis vinifera as assessed by transcriptional profiling (2012) PLoS ONE, 7, p. e39547. , COI: 1:CAS:528:DC%2BC38XpvVCnt7o%3D, PID: 22768087
  • Longhi, S., Hamblin, M.T., Trainotti, L., Peace, C.P., Velasco, R., Costa, F., A candidate gene based approach validates Md-PG1 as the main responsible for a QTL impacting fruit texture in apple (Malus × domestica Borkh) (2013) BMC Plant Biol, 13, p. 37. , COI: 1:CAS:528:DC%2BC3sXltVSrtLk%3D, PID: 23496960
  • Lowe, K.M., Riaz, S., Walker, M.A., Variation in recombination rates across Vitis species (2009) Tree Genet Genomes, 5, pp. 71-80
  • Manso, A., Estudio del desarrollo del color, textura y aroma en uva de mesa (Vitis vinifera L.) (2009) PhD Thesis, , University of Murcia, Spain:
  • Martínez-Romero, D., Guillén, F., Castillo, S., Valero, D., Serrano, M., Modified atmosphere packaging maintains quality of table grapes (2003) J Food Sci, 68, pp. 1838-1843
  • Maury, C., Madieta, E., Le Moigne, M., Mehinagic, E., Siret, R., Jourjon, F., Development of a mechanical texture test to evaluate the ripening process of Cabernet Franc grapes (2009) J Text Stud, 40, pp. 511-535
  • Mejía, N., Gebauer, M., Muñoz, L., Hewstone, N., Muñoz, C., Hinrichsen, P., Identification of QTLs for seedlessness, berry size, and ripening date in a seedless × seedless table grape progeny (2007) Am J Enol Vitic, 58, pp. 499-507
  • Mejía, N., Soto, B., Guerrero, M., Casanueva, X., Houel, C., Miccono, M.A., Ramos, R., Adam-Blondon, A.F., Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine (2011) BMC Plant Biol, 11, p. 57. , PID: 21447172
  • Nelson, C.D., Kubisiak, T.L., Stine, M., Nance, W.L., A genetic linkage map of longleaf pine (Pinus palustris Mill) based on random amplified polymorphic DNAs (1994) J Hered, 85, pp. 433-439. , COI: 1:CAS:528:DyaK2MXjtV2qt7c%3D
  • Nunan, K., Sims, I.M., Bacic, A., Robinson, S., Fincher, G., Changes in cell wall composition during ripening of grape berries (1998) Plant Phys, 118, pp. 783-792. , COI: 1:CAS:528:DyaK1cXnsFektrk%3D
  • Nunan, K.J., Davies, C., Robinson, S.P., Fincher, G.B., Expression patterns of cell wall-modifying enzymes during grape berry development (2001) Planta, 214, pp. 257-264. , COI: 1:CAS:528:DC%2BD3MXovFKns7c%3D, PID: 11800390
  • (2009) OIV descriptor list for grape varieties and Vitis species, , Organisation Internationale de la Vigne et du Vin, Paris:
  • Pilati, S., Perazzolli, M., Malossini, A., Cestaro, A., Demattè, L., Fontana, P., Dal Ri, A., Moser, C., Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison (2007) BMC Genomics, 8, p. 428. , PID: 18034875
  • Riaz, S., Dangl, G.S., Edwards, K.J., Meredith, C.P., A microsatellite marker based framework linkage map of Vitis vinifera L (2004) Theor Appl Genet, 108, pp. 864-872. , COI: 1:CAS:528:DC%2BD2cXktlalsL8%3D, PID: 14605808
  • Riaz, S., Tensher, A.C., Ramming, D.W., Walker, M.A., Using a limited mapping strategy to identify major QTLs for resistance to grapevine powdery mildew (Erysiphe necator) and their use in marker-assisted breeding (2011) Theor Appl Genet, 122, pp. 1059-1073. , COI: 1:STN:280:DC%2BC3M3msVSisg%3D%3D, PID: 21188350
  • Rolle, L., Giacosa, S., Gerbi, V., Novello, V., Comparative study of texture properties, color characteristics, and chemical composition of ten white table-grape varieties (2011) Am J Enol Vitic, 62, pp. 49-56
  • Rolle, L., Siret, R., Río Segade, S., Maury, C., Gerbi, V., Jourjon, F., Instrumental texture analysis parameters as markers of table-grape and winegrape quality: a review (2012) Am J Enol Vitic, 63, p. 1
  • Sato, A., Yamada, M., Berry texture of table, wine, and dual purpose grape cultivars quantified (2003) HortSci, 38, pp. 578-581
  • Sato, A., Yamane, H., Hirakawa, N., Otobe, K., Yamada, M., Varietal differences in the texture of grape berries measured by penetration tests (1997) Vitis, 36, pp. 7-10
  • Schlosser, J., Olsson, N., Weis, M., Reid, K., Peng, F., Lund, S., Bowen, P., Cellular expansion and gene expression in the developing grape (Vitis vinifera L) (2008) Protoplasma, 232, pp. 255-265. , COI: 1:CAS:528:DC%2BD1cXltFeqsbk%3D, PID: 18421552
  • Schwander, F., Eibach, R., Fechter, I., Hausmann, L., Zyprian, E., Töpfer, R., Rpv10: a new locus from the Asian Vitis gene pool for pyramiding downy mildew resistance loci in grapevine (2011) Theor Appl Genet, 124, pp. 163-176. , PID: 21935694
  • Terrier, N., Glissant, D., Grimplet, J., Barrieu, F., Abbal, P., Couture, C., Ageorges, A., Hamdi, S., Isogene specific oligo arrays reveal multifaceted changes in gene expression during grape berry (Vitis vinifera L) development (2005) Planta, 222, pp. 832-847. , COI: 1:CAS:528:DC%2BD2MXht1emsrzL, PID: 16151847
  • Tobler, A.R., Short, S., Andersen, M.R., Paner, T.M., Briggs, J.C., Lambert, S.M., Wu, P.P., Wenz, H.M., The SNPlex genotyping system: a flexible and scalable platform for SNP genotyping (2005) J Biomol Tech, 16, pp. 398-406. , PID: 16522862
  • Van Ooijen, J.W., Voorrips, R.E., JoinMap 3.0 (2001) Software for the calculation of genetic linkage maps, , Plant Research International Wageningen, The Netherlands:
  • Van Ooijen, J.W., Boer, M.P., Jansen, R.C., Maliepaard, C., (2002) MapQTL® 40, software for the calculation of QTL positions on genetic maps, , Plant Research International Wageningen, the Netherlands:
  • Vargas, A., Pérez, J., Zoffoli, J.P., Pérez, A., Comparación de variables de textura en la medición de firmeza de bayas de uva Thompson Seedless (2001) Cien Inv Agr, 28, pp. 37-42
  • Vargas, A.M., Le Cunff, L., This, P., Ibáñez, J., De Andrés, M.T., VvGAI1 polymorphisms associate with variation for berry traits in grapevine (2013) Euphytica, 191, pp. 85-98. , COI: 1:CAS:528:DC%2BC3sXmslaks70%3D
  • Vargas, A.M., Fajardo, C., Borrego, J., De Andrés, M.T., Ibáñez, J., Polymorphisms in  VvPel associate with variation in berry texture and bunch size in the grapevine (2013) Aust J Grape Wine Res, 19, pp. 193-207
  • Velasco, R., High quality draft consensus sequence of the genome of a heterozygous grapevine variety (2007) PLoS ONE, 2, p. e1326. , PID: 18094749
  • Voorrips, R.E., MapChart: Software for the graphical presentation of linkage maps and QTLs (2002) J Hered, 93, pp. 77-78. , COI: 1:CAS:528:DC%2BD38XktlOntrw%3D, PID: 12011185
  • Yakushiji, H., Sakurai, N., Morinaga, K., Changes in cell-wall polysaccharides from the mesocarp of grape berries during veraison (2001) Phys Plant, 111, pp. 188-195. , COI: 1:CAS:528:DC%2BD3MXhtVCqtr4%3D