Use of chemostat cultures mimicking different phases of wine fermentations as a tool for quantitative physiological analysis

Autor: Vazquez-Lima F.; Silva P.; Barreiro A.; Martínez Moreno, RubénMorales Calvo, PilarQuirós Asensio, ManuelGonzález García, Ramón; Albiol J.; Ferrer P.; 

Tipo de documento: Artículo de revista

Revista: Microbial Cell Factories. ISSN: 1475-2859. Año: 2014. Número: 1. Volumen: 13. Páginas: 1-13.

Texto completo open access 

JCR:
Edición:
Science  Área: BIOTECHNOLOGY & APPLIED MICROBIOLOGY  Quartil: Q1  Lugar área: 22/162  F. impacto: 4,221 

SCIMAGO:
SJR:
1,455  SNIP: 1,384 

CIRC: GRUPO A - EXCELENCIA

Referencias:

  • Lavalle, C., Micale, F., Houston, T.D., Camia, A., Hiederer, R., Lazar, C., Conte, C., Genovese, G., Climate change in Europe. 3. Impact on agriculture and forestry. A review (Reprinted) (2009) Agron Sustain Dev, 29, pp. 433-446
  • Trnka, M., Olesen, J.E., Kersebaum, K.C., Skjelvag, A.O., Eitzinger, J., Seguin, B., Peltonen-Sainio, P., Zalud, Z., Agroclimatic conditions in Europe under climate change (2011) Global Change Biol, 17, pp. 2298-2318
  • Olesen, J.E., Trnka, M., Kersebaum, K.C., Skjelvag, A.O., Seguin, B., Peltonen-Sainio, P., Rossi, F., Micale, F., Impacts and adaptation of European crop production systems to climate change (2011) Eur J Agron, 34, pp. 96-112
  • Battaglini, A., Barbeau, G., Bindi, M., Badeck, F.W., European winegrowers' perceptions of climate change impact and options for adaptation (2009) Reg Environ Change, 9, pp. 61-73
  • Salazar-Parra, C., Aguirreolea, J., Sanchez-Diaz, M., Irigoyen, J.J., Morales, F., Effects of climate change scenarios on Tempranillo grapevine (Vitis vinifera L.) ripening: response to a combination of elevated CO2 and temperature, and moderate drought (2010) Plant Soil, 337, pp. 179-191
  • Alonso, A.D., Oneill, M.A., Climate change from the perspective of Spanish wine growers: a three-region study (2011) Br Food J, 113, pp. 205-221
  • Jones, G.V., White, M.A., Cooper, O.R., Storchmann, K., Climate change and global wine quality (2005) Climatic Change, 73, pp. 319-343
  • Borneman, A.R., Chambers, P.J., Pretorius, I.S., Yeast systems biology: modelling the winemaker's art (2007) Trends Biotechnol, 25, pp. 349-355. , 10.1016/j.tibtech.2007.05.006, 17590464
  • Pizarro, F.J., Jewett, M.C., Nielsen, J., Agosin, E., Growth temperature exerts differential physiological and transcriptional responses in laboratory and wine strains of Saccharomyces cerevisiae (2008) Appl Environ Microbiol, 74, pp. 6358-6368. , 10.1128/AEM.00602-08, 2570279, 18723660
  • Rossignol, T., Dulau, L., Julien, A., Blondin, B., Genome-wide monitoring of wine yeast gene expression during alcoholic fermentation (2003) Yeast, 20, pp. 1369-1385. , 10.1002/yea.1046, 14663829
  • Pizarro, F., Vargas, F.A., Agosin, E., A systems biology perspective of wine fermentations (2007) Yeast, 24, pp. 977-991. , 10.1002/yea.1545, 17899563
  • Novo, M., Bigey, F., Beyne, E., Galeote, V., Gavory, F., Mallet, S., Cambon, B., Dequin, S., Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118 (2009) Proc Natl Acad Sci U S A, 106, pp. 16333-16338. , 10.1073/pnas.0904673106, 2740733, 19805302
  • Vargas, F.A., Pizarro, F., Perez-Correa, J.R., Agosin, E., Expanding a dynamic flux balance model of yeast fermentation to genome-scale (2011) BMC Syst Biol, 5, p. 75. , 10.1186/1752-0509-5-75, 3118138, 21595919
  • Aceituno, F.F., Orellana, M., Torres, J., Mendoza, S., Slater, A.W., Melo, F., Agosin, E., Oxygen response of the wine yeast Saccharomyces cerevisiae EC1118 grown under carbon-sufficient, nitrogen-limited enological conditions (2012) Appl Environ Microbiol, 78, pp. 8340-8352. , 10.1128/AEM.02305-12, 3497381, 23001663
  • Nissen, T.L., Schulze, U., Nielsen, J., Villadsen, J., Flux distributions in anaerobic, glucose-limited continuous cultures of Saccharomyces cerevisiae (1997) Microbiology, 143 (PART 1), pp. 203-218
  • Christen, S., Sauer, U., Intracellular characterization of aerobic glucose metabolism in seven yeast species by 13C flux analysis and metabolomics (2011) FEMS Yeast Res, 11, pp. 263-272. , 10.1111/j.1567-1364.2010.00713.x, 21205161
  • Jouhten, P., Rintala, E., Huuskonen, A., Tamminen, A., Toivari, M., Wiebe, M., Ruohonen, L., Maaheimo, H., Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A (2008) BMC Syst Biol, 2, p. 60. , 10.1186/1752-0509-2-60, 2507709, 18613954
  • Daran-Lapujade, P., Jansen, M.L., Daran, J.M., van Gulik, W., de Winde, J.H., Pronk, J.T., Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study (2004) J Biol Chem, 279, pp. 9125-9138. , 10.1074/jbc.M309578200, 14630934
  • Celton, M., Sanchez, I., Goelzer, A., Fromion, V., Camarasa, C., Dequin, S., A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation (2012) BMC Genomics, 13, p. 317. , 10.1186/1471-2164-13-317, 3431268, 22805527
  • Varela, C., Pizarro, F., Agosin, E., Biomass content governs fermentation rate in nitrogen-deficient wine musts (2004) Appl Environ Microbiol, 70, pp. 3392-3400. , 10.1128/AEM.70.6.3392-3400.2004, 427798, 15184136
  • Fredlund, E., Blank, L.M., Schnurer, J., Sauer, U., Passoth, V., Oxygen- and glucose-dependent regulation of central carbon metabolism in Pichia anomala (2004) Appl Environ Microbiol, 70, pp. 5905-5911. , 10.1128/AEM.70.10.5905-5911.2004, 522099, 15466531
  • Jordà, J., Jouhten, P., Camara, E., Maaheimo, H., Albiol, J., Ferrer, P., Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures (2012) Microb Cell Fact, 11, p. 57. , 10.1186/1475-2859-11-57, 3443025, 22569166
  • Frick, O., Wittmann, C., Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis (2005) Microb Cell Fact, 4, p. 30. , 10.1186/1475-2859-4-30, 1291395, 16269086
  • Kleijn, R.J., Geertman, J.M., Nfor, B.K., Ras, C., Schipper, D., Pronk, J.T., Heijnen, J.J., van Winden, W.A., Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data (2007) FEMS Yeast Res, 7, pp. 216-231. , 10.1111/j.1567-1364.2006.00180.x, 17132142
  • Sainz, J., Pizarro, F., Perez-Correa, J.R., Agosin, E., Modeling of yeast metabolism and process dynamics in batch fermentation (2003) Biotechnol Bioeng, 81, pp. 818-828. , 10.1002/bit.10535, 12557315
  • Pizarro, F., Varela, C., Martabit, C., Bruno, C., Perez-Correa, J.R., Agosin, E., Coupling kinetic expressions and metabolic networks for predicting wine fermentations (2007) Biotechnol Bioeng, 98, pp. 986-998. , 10.1002/bit.21494, 17497743
  • Clement, T., Perez, M., Mouret, J.R., Sablayrolles, J.M., Camarasa, C., Use of a continuous multistage bioreactor to mimic winemaking fermentation (2011) Int J Food Microbiol, 150, pp. 42-49. , 10.1016/j.ijfoodmicro.2011.07.016, 21839532
  • Clement, T., Perez, M., Mouret, J.R., Sanchez, I., Sablayrolles, J.M., Camarasa, C., Metabolic responses of Saccharomyces cerevisiae to valine and ammonium pulses during four-stage continuous wine fermentations (2013) Appl Environ Microbiol, 79, pp. 2749-2758. , 10.1128/AEM.02853-12, 3623169, 23417007
  • Quirós, M., Martinez-Moreno, R., Albiol, J., Morales, P., Vázquez-Lima, F., Barreiro-Vázquez, A., Ferrer, P., Gonzalez, R., Metabolic Flux Analysis during the Exponential Growth Phase of Saccharomyces cerevisiae in Wine Fermentations (2013) PLoS One, 8, pp. e71909. , 10.1371/journal.pone.0071909, 3742454, 23967264
  • Tronchoni, J., Gamero, A., Arroyo-Lopez, F.N., Barrio, E., Querol, A., Differences in the glucose and fructose consumption profiles in diverse Saccharomyces wine species and their hybrids during grape juice fermentation (2009) Int J Food Microbiol, 134, pp. 237-243. , 10.1016/j.ijfoodmicro.2009.07.004, 19632733
  • Berthels, N.J., Cordero Otero, R.R., Bauer, F.F., Thevelein, J.M., Pretorius, I.S., Discrepancy in glucose and fructose utilisation during fermentation by Saccharomyces cerevisiae wine yeast strains (2004) FEMS Yeast Res, 4, pp. 683-689. , 10.1016/j.femsyr.2004.02.005, 15093771
  • Ribéreau-Gayon, P., Dubourdieu, D., Donèche, B., Lonvaud, A., (2006) Handbook of Enology. The Microbiology of Wine and Vinifications, , West Sussex, England: Wiley, 2
  • Henscke, P., Jiranek, V., Yeasts - metabolism of nitrogen compounds (1993) Wine Microbiology and Biotechnology, pp. 77-164. , Chur, Switzerland: Harwood Academic, Fleet GH
  • Crepin, L., Nidelet, T., Sanchez, I., Dequin, S., Camarasa, C., Sequential use of nitrogen compounds by Saccharomyces cerevisiae during wine fermentation: a model based on kinetic and regulation characteristics of nitrogen permeases (2012) Appl Environ Microbiol, 78, pp. 8102-8111. , 10.1128/AEM.02294-12, 3485930, 22983966
  • Chiva, R., Baiges, I., Mas, A., Guillamon, J.M., The role of GAP1 gene in the nitrogen metabolism of Saccharomyces cerevisiae during wine fermentation (2009) J Appl Microbiol, 107, pp. 235-244. , 10.1111/j.1365-2672.2009.04201.x, 19302302
  • Beltran, G., Rozes, N., Mas, A., Guillamon, J.M., Effect of low-temperature fermentation on yeast nitrogen metabolism (2007) World J Microbiol Biotechnol, 23, pp. 809-815
  • Landolfo, S., Politi, H., Angelozzi, D., Mannazzu, I., ROS accumulation and oxidative damage to cell structures in Saccharomyces cerevisiae wine strains during fermentation of high-sugar-containing medium (2008) Biochim Biophys Acta, 1780, pp. 892-898. , 10.1016/j.bbagen.2008.03.008, 18395524
  • Mendes-Ferreira, A., Sampaio-Marques, B., Barbosa, C., Rodrigues, F., Costa, V., Mendes-Faia, A., Ludovico, P., Leao, C., Accumulation of non-superoxide anion reactive oxygen species mediates nitrogen-limited alcoholic fermentation by Saccharomyces cerevisiae (2010) Appl Environ Microbiol, 76, pp. 7918-7924. , 10.1128/AEM.01535-10, 3008223, 20952643
  • Ma, M., Liu, Z.L., Mechanisms of ethanol tolerance in Saccharomyces cerevisiae (2010) Appl Microbiol Biotechnol, 87, pp. 829-845. , 10.1007/s00253-010-2594-3, 20464391
  • Perez-Gallardo, R.V., Briones, L.S., Diaz-Perez, A.L., Gutierrez, S., Rodriguez-Zavala, J.S., Campos-Garcia, J., Reactive oxygen species production induced by ethanol in Saccharomyces cerevisiae increases because of a dysfunctional mitochondrial iron-sulfur cluster assembly system (2013) FEMS Yeast Res, 13, pp. 804-819. , 10.1111/1567-1364.12090, 24028658
  • Alexandre, H., Ansanay-Galeote, V., Dequin, S., Blondin, B., Global gene expression during short-term ethanol stress in Saccharomyces cerevisiae (2001) FEBS Lett, 498, pp. 98-103. , 10.1016/S0014-5793(01)02503-0, 11389906
  • Ding, J., Huang, X., Zhang, L., Zhao, N., Yang, D., Zhang, K., Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae (2009) Appl Microbiol Biotechnol, 85, pp. 253-263. , 10.1007/s00253-009-2223-1, 19756577
  • Bleoanca, I., Silva, A.R., Pimentel, C., Rodrigues-Pousada, C., Menezes, R.A., Relationship between ethanol and oxidative stress in laboratory and brewing yeast strains (2013) J Biosci Bioeng, 116, pp. 697-705. , 10.1016/j.jbiosc.2013.05.037, 23838012
  • Porro, D., Vai, M., Vanoni, M., Alberghina, L., Hatzis, C., Analysis and modeling of growing budding yeast populations at the single cell level (2009) Cytometry A, 75, pp. 114-120
  • Portell, X., Ginovart, M., Carbo, R., Gras, A., Vives-Rego, J., Population analysis of a commercial Saccharomyces cerevisiae wine yeast in a batch culture by electric particle analysis, light diffraction and flow cytometry (2011) FEMS Yeast Res, 11, pp. 18-28. , 10.1111/j.1567-1364.2010.00682.x, 21040453
  • Albertin, W., Marullo, P., Aigle, M., Dillmann, C., de Vienne, D., Bely, M., Sicard, D., Population size drives industrial Saccharomyces cerevisiae alcoholic fermentation and is under genetic control (2011) Appl Environ Microbiol, 77, pp. 2772-2784. , 10.1128/AEM.02547-10, 3126379, 21357433
  • Cipollina, C., van den Brink, J., Daran-Lapujade, P., Pronk, J.T., Porro, D., de Winde, J.H., Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis (2008) Microbiology, 154, pp. 1686-1699. , 10.1099/mic.0.2008/017392-0, 18524923
  • Kacmar, J., Gilbert, A., Cockrell, J., Srienc, F., The cytostat: A new way to study cell physiology in a precisely defined environment (2006) J Biotechnol, 126, pp. 163-172. , 10.1016/j.jbiotec.2006.04.015, 16716427
  • Zeng, A.P., Continuous Culture (1999) Manual of Industrial Microbiology and Biotechnology, pp. 151-164. , Washington: American Society for Microbiology, Demain AL, Davies JE, 2
  • Nielsen, J., Microbial process kinetics (2006) Basic Biotechnology, pp. 155-180. , Cambridge: Cambridge University Press, Ratledge C, Kristiansen B, 3
  • Albers, E., Larsson, C., Liden, G., Niklasson, C., Gustafsson, L., Influence of the nitrogen source on Saccharomyces cerevisiae anaerobic growth and product formation (1996) Appl Environ Microbiol, 62, pp. 3187-3195. , 168115, 8795209
  • Camarasa, C., Grivet, J.P., Dequin, S., Investigation by 13C-NMR and tricarboxylic acid (TCA) deletion mutant analysis of pathways for succinate formation in Saccharomyces cerevisiae during anaerobic fermentation (2003) Microbiology, 149, pp. 2669-2678. , 10.1099/mic.0.26007-0, 12949191
  • Costenoble, R., Picotti, P., Reiter, L., Stallmach, R., Heinemann, M., Sauer, U., Aebersold, R., Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics (2011) Mol Syst Biol, 7, p. 464. , 3063691, 21283140
  • Salmon, J.M., Barre, P., Improvement of nitrogen assimilation and fermentation kinetics under enological conditions by derepression of alternative nitrogen-assimilatory pathways in an industrial Saccharomyces cerevisiae strain (1998) Appl Environ Microbiol, 64, pp. 3831-3837. , 106562, 9758807
  • Herbert, D., Phipps, P.J., Strange, R.E., Chapter III Chemical Analysis of Microbial Cells (1971) Methods in Microbiology, Volume 5. Part Bth, pp. 209-344. , London, U.K: Academic Press, Norris JR
  • Smolders, G.J., van der Meij, J., van Loosdrecht, M.C., Heijnen, J.J., Stoichiometric model of the aerobic metabolism of the biological phosphorus removal process (1994) Biotechnol Bioeng, 44, pp. 837-848. , 10.1002/bit.260440709, 18618851
  • Dragosits, M., Mattanovich, D., Gasser, B., Induction and measurement of UPR and osmotic stress in the yeast Pichia pastoris (2011) Methods Enzymol, 489, pp. 165-188
  • Wang, N.S., Stephanopoulos, G., Application of macroscopic balances to the identification of gross measurement errors (1983) Biotechnol Bioeng, 25, pp. 2177-2208. , 10.1002/bit.260250906, 18574815
  • Klamt, S., Saez-Rodriguez, J., Gilles, E.D., Structural and functional analysis of cellular networks with Cell NetAnalyzer (2007) BMC Syst Biol, 1, p. 2. , 10.1186/1752-0509-1-2, 1847467, 17408509